- Generate the index file by tabix
bgzip -c GRCh37_whole_genome_sSNVs_usDSM.vcf > GRCh37_whole_genome_sSNVs_usDSM.vcf.gz
tabix -p vcf GRCh37_whole_genome_sSNVs_usDSM.vcf.gz- Genome Build
- usDSM predictions used the GRCh37/hg19 genome build.
- Running the Software
-
Minimum requirements of usage:
Tabix-0.2.6Add tabix to your PATH:
export PATH=./tabix-0.2.6/:$PATHDownload our pre-computed data:
GRCh37_whole_genome_sSNVs_usDSM.vcf.gz.tbi
MD5Sums: 1c14d58ce0ad91b00e051e435bdc2cd5 - Usage:
-
A synonymous variant, like this:
tabix GRCh37_whole_genome_sSNVs_usDSM.vcf.gz chrom:start-end
e.g.Large batches of synonymous variants, like this:tabix PrDSM_Grch37_20190304.vcf.gz 1:69096-69096
bash file_in.sh > file_out.vcf
e.g.#! /bin/sh tabix GRCh37_whole_genome_sSNVs_usDSM.vcf.gz 1:69096-69096 tabix GRCh37_whole_genome_sSNVs_usDSM.vcf.gz 1:69099-69099 tabix GRCh37_whole_genome_sSNVs_usDSM.vcf.gz 1:69102-69102